Package index • permuteDE

All functions

countCombinations(): Calculate the number of possible group combinations
getCombinations(): Generate combinations
getPseudobulk(): Calculate pseudobulk values
permuteDE(): Perform permutation test
permuteDEpalette(): Generate color palette
permuteDEtheme(): permuteDE ggplot theme
plotDimReduction(): Plot dimensionality reduction
plotFeature(): Plot levels of a single feature across groups
plotHistogram(): Generate histogram plot(s) of permutation test results
plotVolcano(): Generate volcano plot(s) from differential expression results
runDE(): Run differential expression analysis to compare two groups
sample_data: Sample dataset: sample_data